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Apple Cinnamon Protein Muffins
When you want something wholesome, satisfying, and naturally sweet, Apple Cinnamon Protein Muffins are the perfect solution. These soft, moist muffins combine warm cinnamon spice, tender apple chunks, and a boost of protein to create a balanced breakfast or snack that keeps you energized.
Unlike traditional bakery muffins that can be heavy and sugar-loaded, this healthy apple muffin recipe focuses on nutritious ingredients without sacrificing flavor. They’re ideal for busy mornings, post-workout snacks, school lunches, or weekly meal prep.
If you’re looking for healthy high protein muffins that taste like fall in every bite, this recipe delivers comfort and nutrition in one simple bake.

Why You’ll Love These Protein Muffins
- High in protein
- Naturally sweetened
- Made with wholesome ingredients
- Perfect for meal prep
- Kid-friendly
- Freezer-friendly
These protein breakfast muffins strike the perfect balance between indulgent and nutritious.
Ingredients
- 1 cup rolled oats (blended into oat flour or use oat flour)
- 1 cup vanilla or unflavored protein powder
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- 1 teaspoon cinnamon
- ¼ teaspoon salt
- 2 large eggs
- ½ cup plain Greek yogurt
- â…“ cup honey or maple syrup
- ¼ cup unsweetened applesauce
- 1 teaspoon vanilla extract
- 1 cup finely diced apples
- 2 tablespoons milk (if needed for consistency)
Optional Toppings:
- Oats
- Cinnamon sugar
- Chopped walnuts

Instructions
- Preheat oven to 350°F (175°C). Line a 12-cup muffin tin with liners or grease lightly.
- If using rolled oats, blend into fine oat flour.
- In a large bowl, whisk together oat flour, protein powder, baking powder, baking soda, cinnamon, and salt.
- In another bowl, whisk eggs, Greek yogurt, honey, applesauce, and vanilla extract until smooth.
- Pour wet ingredients into dry ingredients and stir until just combined.
- Fold in diced apples gently.
- If batter is too thick, add 1–2 tablespoons milk.
- Divide batter evenly among muffin cups, filling about ¾ full.
- Sprinkle optional toppings if desired.
- Bake for 18–22 minutes until tops are set and a toothpick comes out clean.
- Let cool in pan for 5 minutes, then transfer to wire rack.
Texture Tips for Perfect Muffins
- Do not overmix the batter; it can make muffins dense.
- Dice apples finely for even distribution.
- Use room-temperature ingredients for better blending.
- Check muffins at 18 minutes to prevent overbaking.
Protein Boost Benefits
Protein helps keep you full longer and supports muscle recovery. Adding protein powder and Greek yogurt increases the nutritional value without altering the classic apple cinnamon flavor.
Each muffin contains approximately:
- 10–12g protein (depending on protein powder used)
- Balanced carbohydrates
- Healthy fats
Flavor Variations
Apple Walnut Protein Muffins
Add ¼ cup chopped walnuts for crunch.
Chocolate Chip Apple Muffins
Stir in ¼ cup dark chocolate chips.
Dairy-Free Version
Use dairy-free yogurt alternative.
Extra Spice Blend
Add nutmeg or pumpkin pie spice for deeper flavor.
Serving Suggestions
These meal prep snack muffins are perfect:
- With morning coffee
- After workouts
- Packed in lunchboxes
- As afternoon snack
- With a dollop of Greek yogurt
Warm slightly before serving for enhanced cinnamon aroma.

Storage and Freezing
Refrigeration
Store in airtight container up to 5 days.
Freezing
Freeze up to 3 months. Thaw overnight or microwave 30 seconds.
These muffins maintain texture well, making them ideal for batch baking.
Frequently Asked Questions
Can I use whey or plant-based protein?
Yes. Both work, but texture may vary slightly.
Can I replace applesauce?
Mashed banana works as substitute.
Why are my muffins dry?
Overbaking or too much protein powder can cause dryness.
Nutritional Overview (Approximate Per Muffin)
- Calories: 180
- Protein: 11g
- Carbohydrates: 20g
- Fat: 6g
- Fiber: 3g
Values depend on protein brand and sweetener choice.
Why Apple and Cinnamon Work So Well
Apples provide natural moisture and sweetness, while cinnamon enhances warmth and depth. Together, they create a classic flavor combination that feels comforting year-round, especially during fall.
This recipe turns that traditional pairing into a functional, protein-rich option for modern lifestyles.
Final Thoughts
Apple Cinnamon Protein Muffins offer a practical way to enjoy classic flavors while supporting healthy eating goals. They’re soft, naturally sweet, and satisfying—ideal for anyone wanting nutritious baked goods without sacrificing taste.
Bake a batch once, and they’ll quickly become a staple in your weekly meal prep routine.

Apple Cinnamon Protein Muffins
Ingredients
Equipment
Method
- Preheat oven and prepare muffin tin.
- Mix dry ingredients.
- Combine wet ingredients.
- Fold in apples and bake 18-22 minutes.





